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Chipster is a user-friendly analysis software for high-throughput data. It contains over 500 analysis tools for next generation sequencing (NGS), microarray, and sequence data.

Chipster platform is a distributed system with various backend services and an intuitive web app that has been developed in a usability oriented manner. Different analysis tools can be plugged in, while support for R/Bioconductor integration is emphasised. The backend system is written in Java and TypeScript.

Chipster has been originally developed by CSC- IT Center for Science. A running Chipster system is available at Chipster at CSC site.


Metacentrum runs its own Chipster instance at

To log in, use the e-Infra identity and MetaCentrum login and password.