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Metacentrum Documentation

Tutorials

Metacentrum Documentation

Access
Access
- Overview
- Terms and conditions
- Account
- Log in
- Perun
- PBSmon
- ELIXIR
- Security
  Security
  - SSH key verification
  - Kerberos
Computing
Computing
- Overview
- Basic terms
- Run simple job
- Jobs
  Jobs
- Infrastructure
  Infrastructure
- Resources and queues
  Resources and queues
- GPU computing
  GPU computing
- Parallel computing
Data
Data
Software
Software
- Overview
- Alphabetically sorted software
- Software sorted by field
  Software sorted by field
  - Chemistry
    Chemistry
    
    Amber
    
    Gaussian
    
    Molden
    
    Molpro
    
    Turbomole
    
    VASP
    
    VMD
    
    Wien2k
  - Genomics, proteomics
    Genomics, proteomics
    
    AlphaFold
    
    CLCbio Genomics Workbench
    
    Geneious
  - Compilers, debuggers
    Compilers, debuggers
    
    Allinea DDT
    
    Intel
    
    PGI CDK
    
    RStudio
    
    TotalView
  - Languages
    Languages
    
    R and R packages
    
    Java
  - Mechanics
    Mechanics
    
    Ansys
  - Mathematics
    Mathematics
    
    Maple
    
    Matlab
    
    Wolfram Mathematica
- How to search for software
- How to install software
- Graphical access
- OnDemand
- Modules
- Containers
Troubleshooting
Troubleshooting
- Overview
- FAQs
- Outages
- Known issues
User support
User support
- Contact
- How to write US request
Tutorials Tutorials
Table of contents
- Howtos
- Presentations
- Videos
- Hands-on
Related projects
Related projects
- Galaxy
- Chipster
- Kubernetes/Rancher
- Jupyter notebook
- CollGS
  CollGS

Tutorials

This section collects various presentation, user seminars, videos and other tutorial material.

Howtos

Presentations

Videos

Video on running Matlab graphically, 2021

Hands-on

MetaCentrum hand-on repository on Github