PartitionFinder

module avail partitionfinder/

PartitionFinder is a free open source software to select best-fit partitioning schemes and models of molecular evolution for phylogenetic analyses. Most of the lab's coding output currently goes into PartitionFinder.

Usage

You can run the application by typing PartitionFinder.py instead of python PartitionFinder.py which is used in the official documentation.

To see other parameters of PartitionFinder type PartitionFinder.py --help. In the same manner you can run choooseK.py.

If you would like to run distruct.py you have to use graphical environment.