MEME suite

module avail meme/

MEME suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a variety of other motif-based analyses. The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It provides motif discovery algorithms using both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows discovery of motifs with arbitrary insertions and deletions (GLAM2).

Usage

Available binaries are:

ame
centrimo
dreme
dreme-py3
dust
fimo
glam2
glam2scan
gomo
mast
mcast
meme
meme-chip
momo
purge
spamo
tomtom

Note: Sequence databases (gomo_batabases and motif_databases) are localized in the path /software/meme-suite/5.0.1-mpi/db.

Instead of meme ... -p 2 you can use command mpirun meme without -p parametr. Number of cpus will be taken from PBS system in this case.