Busco

module avail busco/

Busco is a tool for assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.

Usage

Variables

You may need to adjust environment variable AUGUSTUS_CONFIG_PATH to point to some writable directory with configurations. Eg.:

mkdir $SCRATCHDIR/augustus_configs
cp -r $AUGUSTUS_CONFIG_PATH/* $SCRATCHDIR/augustus_configs/
export AUGUSTUS_CONFIG_PATH=$SCRATCHDIR/augustus_configs

Datasets

Datasets (actual to September 2018) are localized in the directory /software/busco/3.0.2/src/db/.