RevBayes

module avail revbayes/

RevBayes is an interactive environment for statistical computation in phylogenetics.

It is primarily intended for modelling, simulation, and Bayesian inference in evolutionary biology.

Usage

Then you can run the RevBayes environment by issuing the command:

rb-mpi

or

mpirun /software/revbayes-1.0.5/bin/rb-mpi

or

rb  # for Singularity/Apptainer images

Environment configuration

You can set your configuration using RevBayes’ inner commands. This configuration is automatically written in the file ~/.RevBayes.ini. The command can set initial RB environment configuration:

rb-mpi /software/revbayes-1.0.5/src_orig/env_setup.nex

The latest versions of RevBayes are maintained as Singularity/Apptainer images, which are available at:

/cvmfs/singularity.metacentrum.cz/RevBayes/

For example, the usage is:

/cvmfs/singularity.metacentrum.cz/RevBayes/revbayes-v1.3.2-linux64-singularity.simg rb input.file

Multi-processor calculations can be run as follows:

/cvmfs/singularity.metacentrum.cz/RevBayes/revbayes-v1.3.2-linux64-singularity.simg mpirun -n XY rb input.file.

Where XY is the number of reserved CPUs (PBS parameter ncpus).