Busco
module avail busco/
Busco is a tool for assessment of genome assembly, gene set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB v9.
Usage
Variables
You may need to adjust environment variable AUGUSTUS_CONFIG_PATH
to point to some writable directory with configurations. Eg.:
mkdir $SCRATCHDIR/augustus_configs
cp -r $AUGUSTUS_CONFIG_PATH/* $SCRATCHDIR/augustus_configs/
export AUGUSTUS_CONFIG_PATH=$SCRATCHDIR/augustus_configs
Datasets
Datasets (actual to September 2018) are localized in the directory /software/busco/3.0.2/src/db/
.